IL_4WFA_038

3D structure

PDB id

4WFA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

4WFA|1|X|A|1187

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WFA_038 not in the Motif Atlas

Homologous match to IL_4WF9_039

Geometric discrepancy: 0.051

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

4WFA|1|X|U|1062
4WFA|1|X|U|1063
4WFA|1|X|A|1064
4WFA|1|X|A|1065
4WFA|1|X|G|1066
4WFA|1|X|U|1067
4WFA|1|X|G|1068
*
4WFA|1|X|C|1184
4WFA|1|X|U|1185
4WFA|1|X|A|1186
4WFA|1|X|A|1187
4WFA|1|X|A|1188

Current chains

Chain X

23S rRNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain G

50S ribosomal protein L13