IL_4WFA_048

3D structure

PDB id

4WFA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

GUGAGUAG*UGAAAUC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WFA_048 not in the Motif Atlas

Homologous match to IL_4WF9_048

Geometric discrepancy: 0.0533

The information below is about IL_4WF9_048

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.3

Basepair signature

cWW-cWW-tSH-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

4WFA|1|X|G|1300
4WFA|1|X|U|1301
4WFA|1|X|G|1302
4WFA|1|X|A|1303
4WFA|1|X|G|1304
4WFA|1|X|U|1305
4WFA|1|X|A|1306
4WFA|1|X|G|1307
*
4WFA|1|X|U|2038
4WFA|1|X|G|2039
4WFA|1|X|A|2040
4WFA|1|X|A|2041
4WFA|1|X|A|2042
4WFA|1|X|U|2043
4WFA|1|X|C|2044

Current chains

Chain X

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain P

50S ribosomal protein L22

Chain Z

50S ribosomal protein L32