IL_4WFA_050

3D structure

PDB id

4WFA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

GGAAG*CGC

Length

8 nucleotides

Bulged bases

4WFA|1|X|G|1369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WFA_050 not in the Motif Atlas

Homologous match to IL_4WF9_050

Geometric discrepancy: 0.0712

The information below is about IL_4WF9_050

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_06671.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

4WFA|1|X|G|1356
4WFA|1|X|G|1357
4WFA|1|X|A|1358
4WFA|1|X|A|1359
4WFA|1|X|G|1360
*
4WFA|1|X|C|1368
4WFA|1|X|G|1369
4WFA|1|X|C|1370

Current chains

Chain X

23S rRNA

Nearby chains

Chain P

50S ribosomal protein L22