IL_4WFA_053

3D structure

PDB id

4WFA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

CCUA*UAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CCUA,UAGG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WFA_053 not in the Motif Atlas

Geometric match to IL_3WBM_003

Geometric discrepancy: 0.2613

The information below is about IL_3WBM_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

4WFA|1|X|C|1444
4WFA|1|X|C|1445
4WFA|1|X|U|1446
4WFA|1|X|A|1447
*
4WFA|1|X|U|1636
4WFA|1|X|A|1637
4WFA|1|X|G|1638
4WFA|1|X|G|1639

Current chains

Chain X

23S rRNA

Nearby chains

Chain Q

50S ribosomal protein L23