IL_4WFA_068

3D structure

PDB id

4WFA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

UGCUAAA*UGAUGUAUA

Length

16 nucleotides

Bulged bases

4WFA|1|X|U|1828, 4WFA|1|X|U|1843, 4WFA|1|X|U|1847

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WFA_068 not in the Motif Atlas

Homologous match to IL_4WF9_069

Geometric discrepancy: 0.0965

The information below is about IL_4WF9_069

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

4WFA|1|X|U|1825
4WFA|1|X|G|1826
4WFA|1|X|C|1827
4WFA|1|X|U|1828
4WFA|1|X|A|1829
4WFA|1|X|A|1830
4WFA|1|X|A|1831
*
4WFA|1|X|U|1840
4WFA|1|X|G|1841
4WFA|1|X|A|1842
4WFA|1|X|U|1843
4WFA|1|X|G|1844
4WFA|1|X|U|1845
4WFA|1|X|A|1846
4WFA|1|X|U|1847
4WFA|1|X|A|1848

Current chains

Chain X

23S rRNA

Nearby chains

Chain A

50S ribosomal protein L2