IL_4WFA_070

3D structure

PDB id

4WFA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

4WFA|1|X|A|1926, 4WFA|1|X|A|1927

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WFA_070 not in the Motif Atlas

Homologous match to IL_4WF9_071

Geometric discrepancy: 0.1438

The information below is about IL_4WF9_071

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

4WFA|1|X|U|1868
4WFA|1|X|G|1869
*
4WFA|1|X|U|1925
4WFA|1|X|A|1926
4WFA|1|X|A|1927
4WFA|1|X|A|1928

Current chains

Chain X

23S rRNA

Nearby chains

Chain A

50S ribosomal protein L2