IL_4WFA_073

3D structure

PDB id

4WFA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

AGGAGU*ACGAAU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WFA_073 not in the Motif Atlas

Geometric match to IL_4V88_462

Geometric discrepancy: 0.3802

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4WFA|1|X|A|1883
4WFA|1|X|G|1884
4WFA|1|X|G|1885
4WFA|1|X|A|1886
4WFA|1|X|G|1887
4WFA|1|X|U|1888
*
4WFA|1|X|A|1908
4WFA|1|X|C|1909
4WFA|1|X|G|1910
4WFA|1|X|A|1911
4WFA|1|X|A|1912
4WFA|1|X|U|1913

Current chains

Chain X

23S rRNA

Nearby chains