IL_4WFA_093

3D structure

PDB id

4WFA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WFA_093 not in the Motif Atlas

Homologous match to IL_4WF9_093

Geometric discrepancy: 0.0772

The information below is about IL_4WF9_093

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

4WFA|1|X|C|2493
4WFA|1|X|C|2494
4WFA|1|X|A|2495
4WFA|1|X|A|2496
4WFA|1|X|G|2497
*
4WFA|1|X|C|2507
4WFA|1|X|G|2508
4WFA|1|X|A|2509
4WFA|1|X|C|2510
4WFA|1|X|G|2511

Current chains

Chain X

23S rRNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain J

50S ribosomal protein L16