IL_4WFA_100

3D structure

PDB id

4WFA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

UUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WFA_100 not in the Motif Atlas

Homologous match to IL_4WF9_100

Geometric discrepancy: 0.0956

The information below is about IL_4WF9_100

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.5

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4WFA|1|X|U|2679
4WFA|1|X|U|2680
4WFA|1|X|A|2681
4WFA|1|X|G|2682
4WFA|1|X|U|2683
4WFA|1|X|A|2684
4WFA|1|X|C|2685
*
4WFA|1|X|G|2690
4WFA|1|X|G|2691
4WFA|1|X|A|2692
4WFA|1|X|C|2693
4WFA|1|X|C|2694
4WFA|1|X|G|2695

Current chains

Chain X

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L6