IL_4WFA_108

3D structure

PDB id

4WFA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

UGGAAG*UGGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WFA_108 not in the Motif Atlas

Homologous match to IL_4WF9_108

Geometric discrepancy: 0.0662

The information below is about IL_4WF9_108

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_48489.1

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

8

Unit IDs

4WFA|1|X|U|2867
4WFA|1|X|G|2868
4WFA|1|X|G|2869
4WFA|1|X|A|2870
4WFA|1|X|A|2871
4WFA|1|X|G|2872
*
4WFA|1|X|U|2885
4WFA|1|X|G|2886
4WFA|1|X|G|2887
4WFA|1|X|A|2888
4WFA|1|X|G|2889

Current chains

Chain X

23S rRNA

Nearby chains

Chain K

50S ribosomal protein L17

Chain M

50S ribosomal protein L19