IL_4WFA_116

3D structure

PDB id

4WFA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

GGAACUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WFA_116 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.059

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

4WFA|1|X|G|1710
4WFA|1|X|G|1711
4WFA|1|X|A|1712
4WFA|1|X|A|1713
4WFA|1|X|C|1714
4WFA|1|X|U|1715
4WFA|1|X|C|1716
4WFA|1|X|G|1717
4WFA|1|X|G|1718
*
4WFA|1|X|C|2017
4WFA|1|X|U|2018
4WFA|1|X|G|2019
4WFA|1|X|U|2020
4WFA|1|X|C|2021

Current chains

Chain X

23S rRNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain H

50S ribosomal protein L14