IL_4WFB_008

3D structure

PDB id

4WFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205

Experimental method

X-RAY DIFFRACTION

Resolution

3.43 Å

Loop

Sequence

CUUAGUAG*CGAAACG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WFB_008 not in the Motif Atlas

Homologous match to IL_4WF9_009

Geometric discrepancy: 0.0591

The information below is about IL_4WF9_009

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.4

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

4WFB|1|X|C|241
4WFB|1|X|U|242
4WFB|1|X|U|243
4WFB|1|X|A|244
4WFB|1|X|G|245
4WFB|1|X|U|246
4WFB|1|X|A|247
4WFB|1|X|G|248
*
4WFB|1|X|C|256
4WFB|1|X|G|257
4WFB|1|X|A|258
4WFB|1|X|A|259
4WFB|1|X|A|260
4WFB|1|X|C|261
4WFB|1|X|G|262

Current chains

Chain X

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L35

Chain I

50S ribosomal protein L15