IL_4WFB_029

3D structure

PDB id

4WFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205

Experimental method

X-RAY DIFFRACTION

Resolution

3.43 Å

Loop

Sequence

GCACU*AAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WFB_029 not in the Motif Atlas

Homologous match to IL_4WF9_033

Geometric discrepancy: 0.1793

The information below is about IL_4WF9_033

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_16301.1

Basepair signature

cWW-cWS-tWH-R-L-R-cWW

Number of instances in this motif group

9

Unit IDs

4WFB|1|X|G|909
4WFB|1|X|C|910
4WFB|1|X|A|911
4WFB|1|X|C|912
4WFB|1|X|U|913
*
4WFB|1|X|A|954
4WFB|1|X|A|955
4WFB|1|X|A|956
4WFB|1|X|C|957

Current chains

Chain X

23S rRNA

Nearby chains

Chain J

50S ribosomal protein L16

Chain Y

5S ribosomal RNA; 5S rRNA