IL_4WFB_034

3D structure

PDB id

4WFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205

Experimental method

X-RAY DIFFRACTION

Resolution

3.43 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

4WFB|1|X|A|1187

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WFB_034 not in the Motif Atlas

Geometric match to IL_4WF9_039

Geometric discrepancy: 0.0575

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

4WFB|1|X|U|1062
4WFB|1|X|U|1063
4WFB|1|X|A|1064
4WFB|1|X|A|1065
4WFB|1|X|G|1066
4WFB|1|X|U|1067
4WFB|1|X|G|1068
*
4WFB|1|X|C|1184
4WFB|1|X|U|1185
4WFB|1|X|A|1186
4WFB|1|X|A|1187
4WFB|1|X|A|1188

Current chains

Chain X

23S rRNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain G

50S ribosomal protein L13