IL_4WFB_045

3D structure

PDB id

4WFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205

Experimental method

X-RAY DIFFRACTION

Resolution

3.43 Å

Loop

Sequence

GGAAG*CGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WFB_045 not in the Motif Atlas

Homologous match to IL_4WF9_050

Geometric discrepancy: 0.0561

The information below is about IL_4WF9_050

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_06671.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

4WFB|1|X|G|1356
4WFB|1|X|G|1357
4WFB|1|X|A|1358
4WFB|1|X|A|1359
4WFB|1|X|G|1360
*
4WFB|1|X|C|1368
4WFB|1|X|G|1369
4WFB|1|X|C|1370

Current chains

Chain X

23S rRNA

Nearby chains

Chain P

50S ribosomal protein L22