IL_4WFB_047

3D structure

PDB id

4WFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205

Experimental method

X-RAY DIFFRACTION

Resolution

3.43 Å

Loop

Sequence

UGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WFB_047 not in the Motif Atlas

Homologous match to IL_4WF9_052

Geometric discrepancy: 0.1108

The information below is about IL_4WF9_052

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

4WFB|1|X|U|1394
4WFB|1|X|G|1395
4WFB|1|X|A|1396
4WFB|1|X|G|1397
4WFB|1|X|G|1398
*
4WFB|1|X|C|1407
4WFB|1|X|G|1408
4WFB|1|X|U|1409
4WFB|1|X|A|1410
4WFB|1|X|G|1411

Current chains

Chain X

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain A

50S ribosomal protein L2