IL_4WFB_061

3D structure

PDB id

4WFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205

Experimental method

X-RAY DIFFRACTION

Resolution

3.43 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

4WFB|1|X|G|1743

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WFB_061 not in the Motif Atlas

Geometric match to IL_4WF9_066

Geometric discrepancy: 0.0758

The information below is about IL_4WF9_066

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_20700.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

10

Unit IDs

4WFB|1|X|C|1730
4WFB|1|X|G|1731
4WFB|1|X|U|1732
4WFB|1|X|A|1733
4WFB|1|X|A|1734
4WFB|1|X|C|1735
*
4WFB|1|X|G|1740
4WFB|1|X|G|1741
4WFB|1|X|A|1742
4WFB|1|X|G|1743
4WFB|1|X|A|1744
4WFB|1|X|A|1745
4WFB|1|X|G|1746

Current chains

Chain X

23S rRNA

Nearby chains

Chain A

50S ribosomal protein L2