IL_4WFB_088

3D structure

PDB id

4WFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205

Experimental method

X-RAY DIFFRACTION

Resolution

3.43 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

4WFB|1|X|U|2518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WFB_088 not in the Motif Atlas

Homologous match to IL_7RQB_094

Geometric discrepancy: 0.0902

The information below is about IL_7RQB_094

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform; mini C-loop

Motif group

IL_92788.2

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

14

Unit IDs

4WFB|1|X|A|2486
4WFB|1|X|U|2487
4WFB|1|X|C|2488
*
4WFB|1|X|G|2516
4WFB|1|X|G|2517
4WFB|1|X|U|2518
4WFB|1|X|U|2519
4WFB|1|X|U|2520

Current chains

Chain X

23S rRNA

Nearby chains

Chain J

50S ribosomal protein L16