IL_4WFB_096

3D structure

PDB id

4WFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205

Experimental method

X-RAY DIFFRACTION

Resolution

3.43 Å

Loop

Sequence

UUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WFB_096 not in the Motif Atlas

Geometric match to IL_4WF9_100

Geometric discrepancy: 0.0692

The information below is about IL_4WF9_100

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.6

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4WFB|1|X|U|2679
4WFB|1|X|U|2680
4WFB|1|X|A|2681
4WFB|1|X|G|2682
4WFB|1|X|U|2683
4WFB|1|X|A|2684
4WFB|1|X|C|2685
*
4WFB|1|X|G|2690
4WFB|1|X|G|2691
4WFB|1|X|A|2692
4WFB|1|X|C|2693
4WFB|1|X|C|2694
4WFB|1|X|G|2695

Current chains

Chain X

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L6