IL_4WOI_047

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCA*UGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WOI_047 not in the Motif Atlas

Geometric match to IL_4N0T_004

Geometric discrepancy: 0.3326

The information below is about IL_4N0T_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_99358.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

4WOI|1|AA|C|998
4WOI|1|AA|C|999
4WOI|1|AA|A|1000
*
4WOI|1|AA|U|1040
4WOI|1|AA|G|1041
4WOI|1|AA|A|1042
4WOI|1|AA|G|1043

Current chains

Chain AA

16S ribosomal RNA

Nearby chains