IL_4WOI_075

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUAAG*CGUUAUAAC

Length

14 nucleotides

Bulged bases

4WOI|1|BA|U|102

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WOI_075 not in the Motif Atlas

Homologous match to IL_5J7L_248

Geometric discrepancy: 0.123

The information below is about IL_5J7L_248

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37015.1

Basepair signature

cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L

Number of instances in this motif group

1

Unit IDs

4WOI|1|BA|G|81
4WOI|1|BA|U|82
4WOI|1|BA|A|83
4WOI|1|BA|A|84
4WOI|1|BA|G|85
*
4WOI|1|BA|C|97
4WOI|1|BA|G|98
4WOI|1|BA|U|99
4WOI|1|BA|U|100
4WOI|1|BA|A|101
4WOI|1|BA|U|102
4WOI|1|BA|A|103
4WOI|1|BA|A|104
4WOI|1|BA|C|105

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BU

50S ribosomal protein L24

Chain BY

50S ribosomal protein L29