IL_4WOI_137

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

4WOI|1|BA|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WOI_137 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.1254

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4WOI|1|BA|U|1712
4WOI|1|BA|A|1713
4WOI|1|BA|U|1714
4WOI|1|BA|G|1715
4WOI|1|BA|U|1716
4WOI|1|BA|A|1717
4WOI|1|BA|G|1718
*
4WOI|1|BA|U|1742
4WOI|1|BA|G|1743
4WOI|1|BA|A|1744
4WOI|1|BA|A|1745
4WOI|1|BA|A|1746

Current chains

Chain BA

23S ribosomal RNA

Nearby chains