IL_4WOI_152
3D structure
- PDB id
- 4WOI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CAU*AUG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary: CAU,AUG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4WOI_152 not in the Motif Atlas
- Geometric match to IL_5ED2_004
- Geometric discrepancy: 0.1322
- The information below is about IL_5ED2_004
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
4WOI|1|BA|C|2096
4WOI|1|BA|A|2097
4WOI|1|BA|U|2098
*
4WOI|1|BA|A|2191
4WOI|1|BA|U|2192
4WOI|1|BA|G|2193
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain BH
- 50S ribosomal protein L9
- Chain DA
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: