IL_4WOI_187
3D structure
- PDB id
- 4WOI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GGAACUG*CUAAGUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4WOI_187 not in the Motif Atlas
- Homologous match to IL_5J7L_250
- Geometric discrepancy: 0.0792
- The information below is about IL_5J7L_250
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
4WOI|1|CA|G|188
4WOI|1|CA|G|189
4WOI|1|CA|A|190
4WOI|1|CA|A|191
4WOI|1|CA|C|192
4WOI|1|CA|U|193
4WOI|1|CA|G|194
*
4WOI|1|CA|C|201
4WOI|1|CA|U|202
4WOI|1|CA|A|203
4WOI|1|CA|A|204
4WOI|1|CA|G|205
4WOI|1|CA|U|206
4WOI|1|CA|A|207
4WOI|1|CA|C|208
Current chains
- Chain CA
- 23S ribosomal RNA
Nearby chains
- Chain C2
- 50S ribosomal protein L34
- Chain C3
- 50S ribosomal protein L35
- Chain CL
- 50S ribosomal protein L15
- Chain CX
- 50S ribosomal protein L28
Coloring options: