IL_4WOI_189

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAG*CGAUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WOI_189 not in the Motif Atlas

Homologous match to IL_5J7L_252

Geometric discrepancy: 0.1308

The information below is about IL_5J7L_252

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47972.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

4WOI|1|CA|C|269
4WOI|1|CA|A|270
4WOI|1|CA|G|271
*
4WOI|1|CA|C|366
4WOI|1|CA|G|367
4WOI|1|CA|A|368
4WOI|1|CA|U|369
4WOI|1|CA|G|370

Current chains

Chain CA

23S ribosomal RNA

Nearby chains