IL_4WOI_192

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

4WOI|1|CA|A|504, 4WOI|1|CA|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WOI_192 not in the Motif Atlas

Homologous match to IL_5J7L_255

Geometric discrepancy: 0.0984

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

4WOI|1|CA|G|481
4WOI|1|CA|A|482
4WOI|1|CA|A|483
4WOI|1|CA|C|484
*
4WOI|1|CA|G|496
4WOI|1|CA|A|497
4WOI|1|CA|G|498
4WOI|1|CA|U|499
4WOI|1|CA|G|500
4WOI|1|CA|A|501
4WOI|1|CA|A|502
4WOI|1|CA|A|503
4WOI|1|CA|A|504
4WOI|1|CA|A|505
4WOI|1|CA|G|506
4WOI|1|CA|A|507
4WOI|1|CA|A|508
4WOI|1|CA|C|509

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CS

50S ribosomal protein L22

Chain CU

50S ribosomal protein L24