IL_4WOI_211

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCAAG*CAACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WOI_211 not in the Motif Atlas

Geometric match to IL_5J7L_274

Geometric discrepancy: 0.1738

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4WOI|1|CA|G|875
4WOI|1|CA|C|876
4WOI|1|CA|A|877
4WOI|1|CA|A|878
4WOI|1|CA|G|879
*
4WOI|1|CA|C|898
4WOI|1|CA|A|899
4WOI|1|CA|A|900
4WOI|1|CA|C|901
4WOI|1|CA|C|902

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CM

50S ribosomal protein L16