IL_4WOI_213

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

4WOI|1|CA|A|1156

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WOI_213 not in the Motif Atlas

Homologous match to IL_5J7L_277

Geometric discrepancy: 0.0733

The information below is about IL_5J7L_277

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

4WOI|1|CA|C|998
4WOI|1|CA|U|999
4WOI|1|CA|A|1000
4WOI|1|CA|A|1001
4WOI|1|CA|G|1002
*
4WOI|1|CA|C|1153
4WOI|1|CA|G|1154
4WOI|1|CA|A|1155
4WOI|1|CA|A|1156
4WOI|1|CA|G|1157

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CB

5S ribosomal RNA; 5S rRNA

Chain CQ

50S ribosomal protein L20

Chain CR

50S ribosomal protein L21

Chain CZ

50S ribosomal protein L30