IL_4WOI_236

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAAG*CUAAG

Length

10 nucleotides

Bulged bases

4WOI|1|CA|A|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WOI_236 not in the Motif Atlas

Homologous match to IL_5J7L_295

Geometric discrepancy: 0.2099

The information below is about IL_5J7L_295

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

4WOI|1|CA|C|1417
4WOI|1|CA|G|1418
4WOI|1|CA|A|1419
4WOI|1|CA|A|1420
4WOI|1|CA|G|1421
*
4WOI|1|CA|C|1577
4WOI|1|CA|U|1578
4WOI|1|CA|A|1579
4WOI|1|CA|A|1580
4WOI|1|CA|G|1581

Current chains

Chain CA

23S ribosomal RNA

Nearby chains