IL_4WOI_249

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

4WOI|1|CA|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WOI_249 not in the Motif Atlas

Geometric match to IL_5J7L_308

Geometric discrepancy: 0.0895

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

4WOI|1|CA|C|1686
4WOI|1|CA|G|1687
4WOI|1|CA|U|1688
4WOI|1|CA|A|1689
4WOI|1|CA|A|1690
4WOI|1|CA|C|1691
*
4WOI|1|CA|G|1696
4WOI|1|CA|G|1697
4WOI|1|CA|A|1698
4WOI|1|CA|G|1699
4WOI|1|CA|A|1700
4WOI|1|CA|A|1701
4WOI|1|CA|G|1702

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CC

50S ribosomal protein L2

Chain DA

Small subunit ribosomal RNA; SSU rRNA