IL_4WOI_261

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

ACG*CUAU

Length

7 nucleotides

Bulged bases

4WOI|1|CA|C|2055, 4WOI|1|CA|U|2613, 4WOI|1|CA|A|2614

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WOI_261 not in the Motif Atlas

Homologous match to IL_5J7L_321

Geometric discrepancy: 0.1198

The information below is about IL_5J7L_321

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83389.2

Basepair signature

cWW-cWW

Number of instances in this motif group

5

Unit IDs

4WOI|1|CA|A|2054
4WOI|1|CA|C|2055
4WOI|1|CA|G|2056
*
4WOI|1|CA|C|2612
4WOI|1|CA|U|2613
4WOI|1|CA|A|2614
4WOI|1|CA|U|2615

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain C0

50S ribosomal protein L32

Chain CD

50S ribosomal protein L3

Chain CS

50S ribosomal protein L22