IL_4WOI_267

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCCUUGAUGUGUAGGAUAG*CCUUUAAUGU

Length

29 nucleotides

Bulged bases

4WOI|1|CA|G|2116

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WOI|1|CA|G|2102
4WOI|1|CA|C|2103
4WOI|1|CA|C|2104
4WOI|1|CA|U|2105
4WOI|1|CA|U|2106
4WOI|1|CA|G|2107
4WOI|1|CA|A|2108
4WOI|1|CA|U|2109
4WOI|1|CA|G|2110
4WOI|1|CA|U|2111
4WOI|1|CA|G|2112
4WOI|1|CA|U|2113
4WOI|1|CA|A|2114
4WOI|1|CA|G|2115
4WOI|1|CA|G|2116
4WOI|1|CA|A|2117
4WOI|1|CA|U|2118
4WOI|1|CA|A|2119
4WOI|1|CA|G|2120
*
4WOI|1|CA|C|2178
4WOI|1|CA|C|2179
4WOI|1|CA|U|2180
4WOI|1|CA|U|2181
4WOI|1|CA|U|2182
4WOI|1|CA|A|2183
4WOI|1|CA|A|2184
4WOI|1|CA|U|2185
4WOI|1|CA|G|2186
4WOI|1|CA|U|2187

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CH

50S ribosomal protein L9