IL_4WOI_273
3D structure
- PDB id
- 4WOI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CGAG*CGAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4WOI_273 not in the Motif Atlas
- Homologous match to IL_5J7L_333
- Geometric discrepancy: 0.0834
- The information below is about IL_5J7L_333
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.15
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 34
Unit IDs
4WOI|1|CA|C|2350
4WOI|1|CA|G|2351
4WOI|1|CA|A|2352
4WOI|1|CA|G|2353
*
4WOI|1|CA|C|2364
4WOI|1|CA|G|2365
4WOI|1|CA|A|2366
4WOI|1|CA|G|2367
Current chains
- Chain CA
- 23S ribosomal RNA
Nearby chains
- Chain C3
- 50S ribosomal protein L35
- Chain CO
- 50S ribosomal protein L18
- Chain CW
- 50S ribosomal protein L27
Coloring options: