IL_4WOI_279

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WOI_279 not in the Motif Atlas

Homologous match to IL_5J7L_338

Geometric discrepancy: 0.0838

The information below is about IL_5J7L_338

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4WOI|1|CA|C|2466
4WOI|1|CA|C|2467
4WOI|1|CA|A|2468
4WOI|1|CA|A|2469
4WOI|1|CA|G|2470
*
4WOI|1|CA|C|2480
4WOI|1|CA|G|2481
4WOI|1|CA|A|2482
4WOI|1|CA|C|2483
4WOI|1|CA|G|2484

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain C4

50S ribosomal protein L36

Chain CM

50S ribosomal protein L16