3D structure

PDB id
4WOI (explore in PDB, NAKB, or RNA 3D Hub)
Description
4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
CG*UAG
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4WOI_295 not in the Motif Atlas
Homologous match to IL_5J7L_355
Geometric discrepancy: 0.1148
The information below is about IL_5J7L_355
Detailed Annotation
Major groove intercalation
Broad Annotation
Major groove intercalation
Motif group
IL_31462.7
Basepair signature
cWW-L-cWW
Number of instances in this motif group
132

Unit IDs

4WOI|1|CB|C|3017
4WOI|1|CB|G|3018
*
4WOI|1|CB|U|3065
4WOI|1|CB|A|3066
4WOI|1|CB|G|3067

Current chains

Chain CB
5S ribosomal RNA

Nearby chains

Chain CA
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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