IL_4WOI_296

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGUCCC*GAAAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WOI_296 not in the Motif Atlas

Homologous match to IL_7RQB_112

Geometric discrepancy: 0.1588

The information below is about IL_7RQB_112

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WOI|1|CB|G|3023
4WOI|1|CB|G|3024
4WOI|1|CB|U|3025
4WOI|1|CB|C|3026
4WOI|1|CB|C|3027
4WOI|1|CB|C|3028
*
4WOI|1|CB|G|3056
4WOI|1|CB|A|3057
4WOI|1|CB|A|3058
4WOI|1|CB|A|3059
4WOI|1|CB|C|3060

Current chains

Chain CB

5S ribosomal RNA

Nearby chains

Chain CF

50S ribosomal protein L5

Chain CO

50S ribosomal protein L18