IL_4WOI_301

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AG*CAU

Length

5 nucleotides

Bulged bases

4WOI|1|DA|A|397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WOI_301 not in the Motif Atlas

Homologous match to IL_5J7L_002

Geometric discrepancy: 0.1174

The information below is about IL_5J7L_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

4WOI|1|DA|A|44
4WOI|1|DA|G|45
*
4WOI|1|DA|C|396
4WOI|1|DA|A|397
4WOI|1|DA|U|398

Current chains

Chain DA

16S ribosomal RNA

Nearby chains

Chain DD

30S ribosomal protein S4

Chain DP

30S ribosomal protein S16