IL_4WOI_309

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AGAAG*CUUCU

Length

10 nucleotides

Bulged bases

None detected

QA status

Self-complementary: AGAAG,CUUCU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WOI_309 not in the Motif Atlas

Geometric match to IL_8D29_010

Geometric discrepancy: 0.3691

The information below is about IL_8D29_010

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.2

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

4WOI|1|DA|A|78
4WOI|1|DA|G|79
4WOI|1|DA|A|80
4WOI|1|DA|A|81
4WOI|1|DA|G|82
*
4WOI|1|DA|C|87
4WOI|1|DA|U|88
4WOI|1|DA|U|89
4WOI|1|DA|C|90
4WOI|1|DA|U|91

Current chains

Chain DA

16S ribosomal RNA

Nearby chains