IL_4WOI_324

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGGCUAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WOI_324 not in the Motif Atlas

Homologous match to IL_5J7L_024

Geometric discrepancy: 0.0876

The information below is about IL_5J7L_024

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

4WOI|1|DA|C|504
4WOI|1|DA|G|505
4WOI|1|DA|G|506
4WOI|1|DA|C|507
4WOI|1|DA|U|508
4WOI|1|DA|A|509
4WOI|1|DA|A|510
4WOI|1|DA|C|511
*
4WOI|1|DA|G|540
4WOI|1|DA|G|541

Current chains

Chain DA

16S ribosomal RNA

Nearby chains

Chain DD

30S ribosomal protein S4

Chain DL

30S ribosomal protein S12