IL_4WOI_336

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WOI_336 not in the Motif Atlas

Homologous match to IL_5J7L_037

Geometric discrepancy: 0.081

The information below is about IL_5J7L_037

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

4WOI|1|DA|C|779
4WOI|1|DA|A|780
4WOI|1|DA|A|781
4WOI|1|DA|A|782
4WOI|1|DA|C|783
*
4WOI|1|DA|G|799
4WOI|1|DA|G|800
4WOI|1|DA|U|801
4WOI|1|DA|A|802
4WOI|1|DA|G|803

Current chains

Chain DA

16S ribosomal RNA

Nearby chains

Chain CA

Large subunit ribosomal RNA; LSU rRNA

Chain DK

30S ribosomal protein S11

Chain DU

30S ribosomal protein S21