IL_4WOI_339

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGG*UU

Length

5 nucleotides

Bulged bases

4WOI|1|DA|G|926

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WOI_339 not in the Motif Atlas

Homologous match to IL_4LFB_036

Geometric discrepancy: 0.0979

The information below is about IL_4LFB_036

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

4WOI|1|DA|G|925
4WOI|1|DA|G|926
4WOI|1|DA|G|927
*
4WOI|1|DA|U|1390
4WOI|1|DA|U|1391

Current chains

Chain DA

16S ribosomal RNA

Nearby chains

Chain DV

Messenger RNA