IL_4WOI_351

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUGC*GAGGAAG

Length

11 nucleotides

Bulged bases

4WOI|1|DA|U|1159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WOI_351 not in the Motif Atlas

Homologous match to IL_5J7L_053

Geometric discrepancy: 0.1187

The information below is about IL_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42032.1

Basepair signature

cWW-cSH-cWW-tWH-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

4WOI|1|DA|C|1158
4WOI|1|DA|U|1159
4WOI|1|DA|G|1160
4WOI|1|DA|C|1161
*
4WOI|1|DA|G|1175
4WOI|1|DA|A|1176
4WOI|1|DA|G|1177
4WOI|1|DA|G|1178
4WOI|1|DA|A|1179
4WOI|1|DA|A|1180
4WOI|1|DA|G|1181

Current chains

Chain DA

16S ribosomal RNA

Nearby chains

Chain DB

30S ribosomal protein S2

Chain DI

30S ribosomal protein S9