IL_4WOI_362

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WOI_362 not in the Motif Atlas

Homologous match to IL_5J7L_062

Geometric discrepancy: 0.092

The information below is about IL_5J7L_062

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

4WOI|1|DA|G|1416
4WOI|1|DA|G|1417
4WOI|1|DA|A|1418
4WOI|1|DA|G|1419
*
4WOI|1|DA|U|1481
4WOI|1|DA|G|1482
4WOI|1|DA|A|1483
4WOI|1|DA|C|1484

Current chains

Chain DA

16S ribosomal RNA

Nearby chains

Chain CA

Large subunit ribosomal RNA; LSU rRNA

Chain DL

30S ribosomal protein S12