IL_4WOI_370

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

4WOI|1|BA|U|846, 4WOI|1|BA|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WOI_370 not in the Motif Atlas

Homologous match to IL_5J7L_399

Geometric discrepancy: 0.1084

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

4WOI|1|BA|A|844
4WOI|1|BA|A|845
4WOI|1|BA|U|846
4WOI|1|BA|U|847
4WOI|1|BA|C|848
*
4WOI|1|BA|G|930
4WOI|1|BA|U|931
4WOI|1|BA|U|932
4WOI|1|BA|A|933
4WOI|1|BA|U|934

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BZ

50S ribosomal protein L30