Loop IL_4WOI

3D structure

PDB id: 4WOI (explore in PDB, NAKB, or RNA 3D Hub)
Description: 4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å

Loop

Sequence: UUGAGCCUUGAUGUGUAGGAUAGGUGG*CCACCCUUUAAUGUUUGA
Length: 45 nucleotides
Bulged bases: 4WOI|1|BA|U|2111, 4WOI|1|BA|G|2116, 4WOI|1|BA|U|2118
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4WOI|1|BA|U|2098
4WOI|1|BA|U|2099
4WOI|1|BA|G|2100
4WOI|1|BA|A|2101
4WOI|1|BA|G|2102
4WOI|1|BA|C|2103
4WOI|1|BA|C|2104
4WOI|1|BA|U|2105
4WOI|1|BA|U|2106
4WOI|1|BA|G|2107
4WOI|1|BA|A|2108
4WOI|1|BA|U|2109
4WOI|1|BA|G|2110
4WOI|1|BA|U|2111
4WOI|1|BA|G|2112
4WOI|1|BA|U|2113
4WOI|1|BA|A|2114
4WOI|1|BA|G|2115
4WOI|1|BA|G|2116
4WOI|1|BA|A|2117
4WOI|1|BA|U|2118
4WOI|1|BA|A|2119
4WOI|1|BA|G|2120
4WOI|1|BA|G|2121
4WOI|1|BA|U|2122
4WOI|1|BA|G|2123
4WOI|1|BA|G|2124
*
4WOI|1|BA|C|2174
4WOI|1|BA|C|2175
4WOI|1|BA|A|2176
4WOI|1|BA|C|2177
4WOI|1|BA|C|2178
4WOI|1|BA|C|2179
4WOI|1|BA|U|2180
4WOI|1|BA|U|2181
4WOI|1|BA|U|2182
4WOI|1|BA|A|2183
4WOI|1|BA|A|2184
4WOI|1|BA|U|2185
4WOI|1|BA|G|2186
4WOI|1|BA|U|2187
4WOI|1|BA|U|2188
4WOI|1|BA|U|2189
4WOI|1|BA|G|2190
4WOI|1|BA|A|2191

Current chains

Chain BA: 23S ribosomal RNA

Nearby chains

Chain AG: 30S ribosomal protein S7
Chain B5: 50S ribosomal protein L1

IL_4WOI_374