IL_4WOI_387

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGG*CUGA

Length

7 nucleotides

Bulged bases

4WOI|1|DA|G|388

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WOI_387 not in the Motif Atlas

Homologous match to IL_6CZR_128

Geometric discrepancy: 0.2354

The information below is about IL_6CZR_128

Detailed Annotation

Single bulged G, near cWW

Broad Annotation

Single bulged G, near cWW

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

4WOI|1|DA|U|375
4WOI|1|DA|G|376
4WOI|1|DA|G|377
*
4WOI|1|DA|C|386
4WOI|1|DA|U|387
4WOI|1|DA|G|388
4WOI|1|DA|A|389

Current chains

Chain DA

16S ribosomal RNA

Nearby chains

Chain DP

30S ribosomal protein S16

Chain DT

30S ribosomal protein S20