IL_4WPO_095

3D structure

PDB id

4WPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

4WPO|1|AA|U|2503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WPO_095 not in the Motif Atlas

Geometric match to IL_7RQB_094

Geometric discrepancy: 0.0454

The information below is about IL_7RQB_094

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform; mini C-loop

Motif group

IL_92788.2

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

14

Unit IDs

4WPO|1|AA|A|2471
4WPO|1|AA|U|2472
4WPO|1|AA|C|2473
*
4WPO|1|AA|G|2501
4WPO|1|AA|G|2502
4WPO|1|AA|U|2503
4WPO|1|AA|U|2504
4WPO|1|AA|U|2505

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain A0

50S ribosomal protein L27

Chain AQ

50S ribosomal protein L16

Chain BW

Transfer RNA; tRNA