IL_4WPO_186

3D structure

PDB id

4WPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WPO_186 not in the Motif Atlas

Homologous match to IL_7RQB_007

Geometric discrepancy: 0.0483

The information below is about IL_7RQB_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

4WPO|1|CA|U|239
4WPO|1|CA|G|240
4WPO|1|CA|A|241
4WPO|1|CA|G|242
4WPO|1|CA|U|243
4WPO|1|CA|A|244
4WPO|1|CA|G|245
*
4WPO|1|CA|C|253
4WPO|1|CA|G|254
4WPO|1|CA|A|255
4WPO|1|CA|A|256
4WPO|1|CA|A|257
4WPO|1|CA|G|258

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain C8

50S ribosomal protein L35

Chain CP

50S ribosomal protein L15