IL_4WPO_193

3D structure

PDB id

4WPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CCU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WPO_193 not in the Motif Atlas

Homologous match to IL_7RQB_015

Geometric discrepancy: 0.0601

The information below is about IL_7RQB_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

270

Unit IDs

4WPO|1|CA|C|564
4WPO|1|CA|C|565
4WPO|1|CA|U|566
*
4WPO|1|CA|A|575
4WPO|1|CA|U|576
4WPO|1|CA|G|577

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain C5

50S ribosomal protein L32

Chain CE

50S ribosomal protein L3

Chain CF

50S ribosomal protein L4

Chain CP

50S ribosomal protein L15

Chain CU

50S ribosomal protein L20

Chain CV

50S ribosomal protein L21