IL_4WPO_210

3D structure

PDB id

4WPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GG*UAC

Length

5 nucleotides

Bulged bases

4WPO|1|CA|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WPO_210 not in the Motif Atlas

Geometric match to IL_4P43_003

Geometric discrepancy: 0.3747

The information below is about IL_4P43_003

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

4WPO|1|CA|G|880
4WPO|1|CA|G|881
*
4WPO|1|CA|U|895
4WPO|1|CA|A|896
4WPO|1|CA|C|897

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain CZ

50S ribosomal protein L25

Chain DW

Transfer RNA; tRNA